galaxy-job-execution

Galaxy job execution runtime utilities

Project description

https://badge.fury.io/py/galaxy-job-execution.svg

Overview

The Galaxy job execution runtime module.

Code: https://github.com/galaxyproject/galaxy

History

24.0.0 (2024-04-02)

Bug fixes

Fixes for output discovery by @bernt-matthias in #17266
Fix change_datatype PJA for dynamic collections by @mvdbeek in #17803

Enhancements

Python 3.8 as minimum by @mr-c in #16954
Extend regex groups in stdio regex matches by @bernt-matthias in #17016
Update to black 2024 stable style by @nsoranzo in #17391

23.2.1 (2024-02-21)

Enhancements

Replace file_name property with get_file_name function by @SergeyYakubov in #16783
Enable some flake8-logging-format rules in ruff by @nsoranzo in #16915
Move and re-use persist_extra_files by @mvdbeek in #16955
optimize object store cache operations by @SergeyYakubov in #17025

23.1.4 (2024-01-04)

No recorded changes since last release

23.1.3 (2023-12-01)

No recorded changes since last release

23.1.2 (2023-11-29)

Bug fixes

Fix library import from path linking files by @davelopez in #16919
Don’t store job in JobIO instance attributes by @mvdbeek in #16965
Fix extra files collection if using store_by="id" and outputs_to_working_directory by @mvdbeek in #17067

23.1.1 (2023-10-23)

Bug fixes

Fix tags ownership by @davelopez in #16339
Push to object store even if set_meta fails by @mvdbeek in #16667
Fix metadata setting in extended metadata + outputs_to_working_directory mode by @mvdbeek in #16678
Fix ItemOwnerShipException in tag removal by @mvdbeek in #16773
Fix and prevent persisting null file_size by @mvdbeek in #16855

Enhancements

Empower Users to Select Storage Destination by @jmchilton in #14073
Towards SQLAlchemy 2.0: drop session autocommit setting by @jdavcs in #15421
Unify url handling with filesources by @nuwang in #15497
Handle “email_from” config option consistently, as per schema description by @jdavcs in #15557
Record input datasets and collections at full parameter path by @mvdbeek in #15978
Code cleanups from ruff and pyupgrade by @nsoranzo in #16035
Improved Cache Monitoring for Object Stores by @jmchilton in #16110
Remove various fallback behaviors by @mvdbeek in #16199

23.0.6 (2023-10-23)

Bug fixes

Fix extra files path handling by @mvdbeek in #16541
Make sure job_wrapper uses a consistent metadata strategy by @mvdbeek in #16569
Fixes for extra files handling and cached object stores by @mvdbeek in #16595

23.0.5 (2023-07-29)

No recorded changes since last release

23.0.4 (2023-06-30)

No recorded changes since last release

23.0.3 (2023-06-26)

No recorded changes since last release

23.0.2 (2023-06-13)

No recorded changes since last release

23.0.1 (2023-06-08)

No recorded changes since last release

20.9.0 (2020-10-15)

First release from the 20.09 branch of Galaxy.

20.5.0 (2020-07-04)

First release from the 20.05 branch of Galaxy.

Project details

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This version

24.0.0

Apr 3, 2024

23.2.1

Feb 22, 2024

23.1.4

Jan 4, 2024

23.1.3

Dec 1, 2023

23.1.2

Nov 29, 2023

23.1.1

Oct 23, 2023

23.1.dev0 pre-release

Feb 12, 2024

23.0.6

Oct 23, 2023

23.0.5

Jul 30, 2023

23.0.4

Jun 30, 2023

23.0.3

Jun 26, 2023

23.0.2

Jun 13, 2023

23.0.1

Jun 8, 2023

22.1.1

Aug 22, 2022

21.9.0

Nov 2, 2021

20.9.0

Oct 15, 2020

20.5.0

Jul 4, 2020

19.9.0.dev0 pre-release

Jun 10, 2019

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